发表论文
2024：
[1] Huang X, Zhang W, Liao Y, Ye J, Xu F. Contemporary understanding of transcription factor regulation of terpenoid biosynthesis in plants. Planta. 2023 Nov 16;259(1):2.
[2] Li Y, Zhang X, Ye J, Xu F, Zhang W, Liao Y, Yang X. The long noncoding RNAs lnc10 and lnc11 regulating flavonoid biosynthesis in Ginkgo biloba. Plant Sci. 2024 Feb;339:111948.
[3] Liu X, Ye J, Zhang X, Yang K, Zheng J, Cheng S, Zhang W, Xu F. Multi-omics explores the potential regulatory role of acetylation modification in flavonoid biosynthesis of Ginkgo biloba. Tree Physiol. 2024 Jun 3;44(6):tpae051.
[4] Wang C, Zeng S, Liu Y, Ye J, Xu F. Editorial: Non-coding RNA regulation of secondary metabolism in plants. Front Plant Sci. 2024 Mar 11;15:1382709. .
[5] Zhang W, Xu F, Kwon M. Editorial: Biosynthesis and regulation of plant specialized metabolisms. Front Plant Sci. 2023 Nov 9;14:1319666.
[6] Zhang X, Chen W, Yang Z, Luo C, Zhang W, Xu F, Ye J, Liao Y. Genetic diversity analysis and DNA fingerprint construction of Zanthoxylum species based on SSR and iPBS markers. BMC Plant Biol. 2024 Sep 7;24(1):843.
[7] Zheng J, Yang X, Ye J, Su D, Wang L, Liao Y, Zhang W, Wang Q, Chen Q, Xu F. Multiomics analysis provides new insights into the regulatory mechanism of carotenoid biosynthesis in yellow peach peel. Mol Hortic. 2023 Nov 3;3(1):23.
[8] Zheng J, He X, Zhou X, Liu X, Yi Y, Su D, Zhang W, Liao Y, Ye J, Xu F. The Ginkgo biloba microRNA160-ERF4 module participates in terpene trilactone biosynthesis. Plant Physiol. 2024 May 31;195(2):1446-1460.
[9] Zhou X, Cao J, Liu XM, Wang LN, Zhang WW, Ye JB, Xu F, Cheng S. Cloning and functional analysis of Gb4CL1 and Gb4CL2 from Ginkgo biloba. Plant Genome. 2024 Jun;17(2):e20440.
[10] Zheng Jiarui, Liao Yongling, Ye Jiabao, Xu Feng, Zhang Weiwei, Zhou Xian, Wang Lina, He Xiao, Cao Zhengyan, Yi Yuwei, Xue Yansheng, Chen Qiangwen, Sun Jiaxing. The transcription factor MYC2 positively regulates terpene trilactone biosynthesis through activating GbGGPPS expression in Ginkgo biloba, Horticulture Research, 2024, uhae228.
2023：
[11] Han H, Dong L, Zhang W, Liao Y, Wang L, Wang Q, Ye J, Xu F. Ginkgo biloba GbbZIP08 transcription factor is involved in the regulation of flavonoid biosynthesis[J]. J Plant Physiol. 2023 Aug; 287:154054
[12] Han H, Wang C, Yang X, Wang L, Ye J, Xu F, Liao Y, Zhang W. Role of bZIP transcription factors in there gelation of plant secondary metabolism. Planta[J]. 2023 Jun10; 258(1):13.
[13] Zhang X, Chen Z, Wang C, Zhou X, Tang N, Zhang W, Xu F, Yang Z, Luo C, Liao Y, Ye J. Genome-wide identification of HD-ZIP gene family and screening of genes related to prickle development in Zanthoxy lumarmatum[J]. Plant Genome. 2023 Mar; 16(1): e20295.
[14] LI Y, HAN H, FU M, et al. Genome-wide identification and expression analysis of NAC family genes in Ginkgo biloba l.[J].Plant Biol (Stuttg),2022,25(1):107-118.
[15] Wu H, Yang K, Dong L, Ye J, Xu F. Classification, Distribution, Biosynthesis, and Regulation of Secondary Metabolitesin in Matricaria chamomilla[J]. Horticulturae 2022, 8, 1135.
[16] Yang K, Liu Z, Chen X, Zhou X, Ye J, Xu F, Zhang W, Liao Y, Yang X, Wang Q. Genome-Wide Identification and Expression Analysis of the MADS-Box Family in Ginkgo biloba[J]. Forests,2022,13(11):1953-1953.
[17] SHANG G, MENG Z, QINYUE Z, et al. Effects of exogenous zinc (ZnSO4·7H2O) on photosynthetic characteristics and grain quality of hybrid rice [J]. Plant Physiology and Biochemistry, 2023, 205.
[18] SONG L, HUANG Y, ZUO H, et al. Chromosome-level assembly of triploid genome of sichuan pepper (Zanthoxylum armatum) [J]. Horticultural Plant Journal, 2022.
[19] WU P, WANG G, CAO Z, et al. Effects of different light qualities and plant growth regulators on the growth and secondary metabolite content of Lonicera macranthoides seedlings [J]. In Vitro Cellular & Developmental Biology - Plant, 2023, 59(5): 536-46.
[20] YU L, CHEN Q, LIAO X, et al. Exploring Effects of Exogenous Selenium on the Growth and Nutritional Quality of Cabbage (Brassica oleracea var. capitata L.) [J]. Horticulturae, 2023, 9(3).
[21] Liu, N.; Du, H.; Xue, Y.; Liao, Y.; Zhang, W.; Ye, J.; Wang, Q.; Xu, F. Genome-Wide Identification and Expression Analysis of the Walnut C-Repeat Binding Factor Gene Family under Low-Temperature Stress.Forests,2023,14, 2274.
[22] 郑嘉瑞, 杨晓燕, 叶家保, 廖咏玲, 许锋. MYC2转录因子在植物中的功能研究进展 [J]. 园艺学报, 2023, 50(4): 896-908.
2022：
[23] Qiangwen Chen, Li Yu, Wei Chao, Juan Xiang, Xiaoyan Yang, Jiabao Ye, Xiaoli Liao, Xian Zhou, Shen Rao, Shuiyuan Cheng, Xin Cong, Bo Xiao, Feng Xu. Comparative physiological and transcriptome analysis reveals the potential mechanism of selenium accumulation and tolerance to selenate toxicity of Broussonetia papyrifera [J]. Tree Physiology. 2022.
[24] Jiaying Gui, Shen Rao, Xinru Huang, Xiaomeng Liu, Shuiyuan Cheng, Feng Xu. Interaction between selenium and essential micronutrient elements in plants: A systematic review [J]. Science of the Total Environment. 2022; 158673
[25] Xiao He, Xiaomeng Liu, Jiarui Zheng, Jiabao Ye, Yongling Liao, Feng Xu. Identification and Analysis of JAZ Gene Family in Ginkgo biloba Reveals Candidate Genes for Biosynthesis of Terpene Trilactones [J]. Forests, 2022; 13(5):781.
[26] Xiaozhuo Lai, Xiaoyan Yang, Shen Rao, Zhenzhou Zhu, Xin Cong, Jiabao Ye, Weiwei Zhang, Yongling Liao, Shuiyuan Cheng, Feng Xu. Advances in physiological mechanisms of selenium to improve heavy metal stress tolerance in plants [J]. Plant Biology (Stuttg). 2022.
[27] Xiaomeng Liu, Xiao He, Zhongbing Liu, Peiyin Wu, Ning Tang, Zexiong Chen, Weiwei Zhang, Shen Rao, Shuiyuan Cheng, Chengrong Luo, Feng Xu. Transcriptome mining of genes in Zanthoxylum armatum revealed ZaMYB86 as a negative regulator of prickly development. Genomics [J]. 2022; 114(3):110374.
[28] Xiaomeng Liu, Xiaoxi Zhang, Xiao He, Ke Yang, Xinru Huang, Jiabao Ye, Weiwei Zhang, Feng Xu. Identification and analysis of CYP450 family members in Ginkgo biloba reveals the candidate genes for terpene trilactone biosynthesis [J]. Scientia Horticulturae, 2022; 301:111103.
[29] Xiaomeng Liu, Ning Tang, Feng Xu, Zexiong Chen, Xian Zhang, Jiabao Ye, Yongling Liao, Weiwei Zhang, Soo-Un Kim, Peiyin Wu, Zhengyan Cao. SMRT and Illumina RNA sequencing reveal the complexity of terpenoid biosynthesis in Zanthoxylum armatum [J]. Tree Physiology. 2022; 42(3):664-683.
[30] Caini Wang, Lina Wang, Jiabao Ye, Feng Xu. Fruit quality of Vitis vinifera: How plant metabolites are affected by genetic, environmental, and agronomic factors [J]. Scientia Horticulturae, 2022; 305: 111404.
[31] Ke Yang, Huan Han, Yuting Li, Jiabao Ye, Feng Xu. Significance of miRNA in enhancement of flavonoid biosynthesis [J]. Plant Biology. 2022; 24(2):217-226.
[32] Xiaoyan Yang, Xiaoli Liao, Li Yu, Shen Rao, Qiangwen Chen, Zhenzhou Zhu, Xin Cong, Weiwei Zhang, Jiabao Ye, Shuiyuan Cheng, Feng Xu. Combined metabolome and transcriptome analysis reveal the mechanism of selenate influence on the growth and quality of cabbage (Brassica oleracea var. capitata L.) [J]. Food Research International. 2022; 156:111135.
[33] Li Yu, Qiangwen Chen, Jiarui Zheng, Feng Xu, Jiabao Ye, Weiwei Zhang, Yongling Liao, Xiaoyan Yang. Genome-wide identification and expression pattern analysis of the TCP transcription factor family in Ginkgo biloba [J]. Plant Signaling & Behavior. 2022; 17(1):1994248.
[34] Jiarui Zheng, Jiefeng Yang, Xiaoyan Yang, Zhengyan Cao, Shaoping Cai, Bo Wang, Jiabao Ye, Mingyue Fu, Weiwei Zhang, Shen Rao, Dan Du, Yongling Liao, Xiongbo Jiang, Feng Xu. Transcriptome and miRNA sequencing analyses reveal the regulatory mechanism of α-linolenic acid biosynthesis in Paeonia rockii [J]. Food Research International. 2022; 155:111094.
[35] Yuting Li, Huan Han, Jiabao Ye, Feng Xu, Weiwei Zhang, Yongling Liao. Regulation mechanism of long non-coding RNA in plant secondary metabolite biosynthesis [J]. Notulae Botanicae Horti Agrobotanici Cluj-Napoca. 2022; 50(2):12604.
[36] 饶申, 程华, 刘浩东, 张悦, 丛欣, 许锋, 程水源. 硒对十字花科作物营养品质的影响综述 [J].食品科技, 2022, 47(03): 30-35.
2021：
[37] Shen Rao, Tian Yu, Xin Cong, Xiaozhuo Lai, Jiqian Xiang, Jie Cao, Xiaoli Liao, Yuanyuan Gou, Wei Chao, Hua Xue, Shuiyuan Cheng, Feng Xu. Transcriptome, proteome, and metabolome reveal the mechanism of tolerance to selenate toxicity in Cardamine violifolia [J]. Journal of Hazardous Materials. 2021; 406.
[38] Mingyue Fu, Xu Yang, Jiarui Zheng, Ling Wang, Xiaoyan Yang, Yi Tu, Jiabao Ye, Weiwei Zhang, Yongling Liao, Shuiyuan Cheng, Feng Xu. Unraveling the regulatory mechanism of color diversity in Camellia japonica petals by integrative transcriptome and metabolome analysis [J]. Frontiers in Plant Science. 2021; 12.
[39] Shen Rao, Yuanyuan Gou, Tian Yu, Xin Cong, Jiaying Gui, Zhenzhou Zhu, Weiwei Zhang, Yongling Liao, Jiabao Ye, Shuiyuan Cheng, Feng Xu. Effects of selenate on Se, flavonoid, and glucosinolate in broccoli florets by combined transcriptome and metabolome analyses [J]. Food Research International. 2021; 146.
[40] Xian Zhou, Lanlan Wang, Janping Yan, Jiabao Ye, Shuiyuan Cheng, Feng Xu, Guiyuan Wang, Weiwei Zhang, Yongling Liao, Xiaomeng Liu. Functional characterization of the EMBRYONIC FLOWER 2 gene involved in flowering in Ginkgo biloba [J]. Frontiers in Plant Science. 2021; 12.
[41] Mingyue Fu, Zhongcheng Zhou, Xu Yang, Zhongbing Liu, Jiarui Zheng, Xinru Huang, Ling Wang, Jiabao Ye, Weiwei Zhang, Yongling Liao, Feng Xu. Comparative transcriptome and microbial community sequencing provide insight into yellow-leaf phenotype of Camellia japonica. BMC Plant Biology. 2021; 21.
[42] Jia-Ying Gui, Shen Rao, Yuanyuan Gou, Feng Xu, Shuiyuan Cheng. Comparative study of the effects of selenium yeast and sodium selenite on selenium content and nutrient quality in broccoli florets (Brassica oleracea L. var. italica). Journal of the Science of Food and Agriculture. 2021.
[43] Xiao-Meng Liu, Jun-Ping Tan, Shui-Yuan Cheng, Ze-Xiong Chen, Jia-Bao Ye, Jia-Rui Zheng, Feng Xu, Wei-Wei Zhang, Yong-Ling Liao, Xiao-Yan Yang. Comparative transcriptome analysis provides novel insights into the molecular mechanism of berberine biosynthesis in Coptis chinensis. Scientia Horticulturae. 2021.
[44] Shen Rao, Tian Yu, Xin Cong, Weiwei Zhang, Zhenzhou Zhu, Yongling Liao, Jiabao Ye, Shuiyuan Cheng, Feng Xu. Effects of selenate applied at two growth stages on the nutrient quality of Cardamine violifolia. Scientia Horticulturae. 2021; 288.
[45] Huan Han, Feng Xu, Yuting Li, Li Yu, Mingyue Fu, Yongling Liao, Weiwei Zhang, JiabaoYe. Genome‑wide characterization of bZIP gene family identifes potential members involved in favonoids biosynthesis in Ginkgo biloba L. scientific reports. 2021; 11(1):23420.
2020：
[46] Jiabao Ye, Xian Zhang, Junping Tan, Feng Xu, Shuiyuan Cheng, Zexiong Chen, Weiwei Zhang, Yongling Liao. Global identification of Ginkgo biloba microRNAs and insight into their role in metabolism regulatory network of terpene trilactones by high-throughput sequencing and degradome analysis [J]. Industrial Crops and Products. 2020; 148.
[47] Jiabao Ye, Dun Mao, Shuiyuan Cheng, Xian Zhang, Junping Tan, Jiarui Zheng, Feng Xu. Comparative transcriptome analysis reveals the potential stimulatory mechanism of terpene trilactone biosynthesis by exogenous salicylic acid in Ginkgo biloba [J]. Industrial Crops and Products. 2020; 145.
[48] Shen Rao, Tian Yu, Xin Cong, Feng Xu, Xiaozhuo Lai, Weiwei Zhang, Yongling Liao, Shuiyuan Cheng. Integration analysis of PacBio SMRT- and Illumina RNA-seq reveals candidate genes and pathway involved in selenium metabolism in hyperaccumulator Cardamine violifolia [J]. BMC Plant Biology. 2020; 20(1).
[49] Xiao-Meng Liu, Shui-Yuan Cheng, Jia-Bao Ye, Ze-Xiong Chen, Yong-Ling Liao, Wei-Wei Zhang, Soo-Un Kim, Feng Xu. Screening and identification of miRNAs related to sexual differentiation of strobili in Ginkgo biloba by integration analysis of small RNA, RNA, and degradome sequencing [J]. BMC Plant Biology. 2020; 20(1).
[50] Yuanyuan Gou, Shuiyuan Cheng, Jiabao Ye, Xian Zhou, Feng Xu, Zexiong Chen, Weiwei Zhang, Yongling Liao. Comparative transcriptome analysis reveals the potential molecular mechanism involved in fatty acids biosynthesis of Juglans regia [J]. Scientia Horticulturae. 2020; 269.
[51] Xian Zhou, Yongling Liao, Soo-Un Kim, Zexiong Chen, Gongping Nie, Shuiyuan Cheng, Jiabao Ye, Feng Xu. Genome-wide identification and characterization of bHLH family genes from Ginkgo biloba [J]. Scientific Reports. 2020; 10(1).
[52] Xian Zhang, Ning Tang, Xiaomeng Liu, Jiabao Ye, Jingyi Zhang, Zexiong Chen, Feng Xu, Weiwei Zhang, Yongling Liao. Comparative transcriptome analysis identified differentially expressed genes between male and female flowers of Zanthoxylum armatum var. novemfolius [J]. Agronomy-Basel. 2020; 10(2).
2019：
[53] Jiabao Ye, Shuiyuan Cheng, Xian Zhou, Zexiong Chen, Soo Un Kim, Junping Tan, Jiarui Zheng, Feng Xu, Weiwei Zhang, Yongling Liao, Yongxing Zhu. A global survey of full-length transcriptome of Ginkgo biloba reveals transcript variants involved in flavonoid biosynthesis [J]. Industrial Crops & Products. 2019; 139.
[54] Qiling Song, Shuiyuan Cheng, Zexiong Chen, Gongping Nie, Feng Xu, Jian Zhang, Mingqin Zhou, Weiwei Zhang, Yongling Liao and Jiabao Ye. Comparative transcriptome analysis revealing the potential mechanism of seed germination stimulated by exogenous gibberellin in Fraxinus hupehensis. BMC Plant Biology. 2019; 19(1).
[55] Xiaomeng Liu, Xiaohui Wang, Zexiong Chen, Jiabao Ye, Yongling Liao, Weiwei Zhang, Jie Chang, Feng Xu. De novo assembly and comparative transcriptome analysis: novel insights into terpenoid biosynthesis in Chamaemelum nobile L. Plant Cell Reports. 2019; 38(1).
[56] Lanlan Wang, Jiaping Yan, Xian Zhou, Shuiyuan Cheng, Zexiong Chen, Qiling Song, Xiaomeng Liu, Jiabao Ye, Weiwei Zhang, Guangxu Wu, Feng Xu. GbFT, a FLOWERING LOCUS T homolog from Ginkgo biloba, promotes flowering in transgenic Arabidopsis. Scientia Horticulturae. 2019; 247.
[57] Jiabao Ye, Guiyuan Wang, Junping Tan, Jiarui Zheng, Xian Zhang, Feng Xu, Shuiyuan Cheng, Zexiong Chen, Weiwei Zhang, Yongling Liao. Identification of candidate genes involved in anthocyanin accumulation using Illmuina-based RNA-seq in peach skin. Scientia Horticulturae. 2019; 250.
[58] Jiabao Ye, Guiyuan Wang, Junping Tan, Jiarui Zheng, Xian Zhang, Feng Xu, Shuiyuan Cheng, Zexiong Chen, Weiwei Zhang, Yongling Liao. Identification of candidate genes involved in anthocyanin accumulation using Illmuina-based RNA-seq in peach skin. Scientia Horticulturae. 2019; 250.
[59] Xian Zhou, Junping Tan, Yuanyuan Gou, Yongling Liao, Feng Xu, Gang Li, Jie Cao, Jinglei Yao, Jiabao Ye, Ning Tang, Zexiong Chen. The biocontrol of postharvest decay of table grape by the application of kombucha during cold storage [J]. Scientia Horticulturae. 2019; 253.
2018：
[60] Shuiyuan Cheng, Jiaping Yan, Xiangxiang Meng, Weiwei Zhang, Yongling Liao, Jiabao Ye, Feng Xu. Characterization and expression patterns of a cinnamate-4-hydroxylase gene involved in lignin biosynthesis and in response to various stresses and hormonal treatments in Ginkgo biloba. Acta Physiologiae Plantarum. 2018; 40(1).
[61] Weiwei Zhang, Tingting Tao, Xiaomeng Liu, Feng Xu, Jie Chang, Yongling Liao. De novo assembly and comparative transcriptome analysis: novel insights into sesquiterpenoid biosynthesis in Matricaria chamomilla L. Acta Physiologiae Plantarum. 2018; 40.
[62] Xiangxiang Meng, Feng Xu, Qiling Song, Jiabao Ye, Yongling Liao, Weiwei Zhang. Isolation, characterization and functional analysis of a novel 3-hydroxy-3-methylglutaryl-coenzyme A synthase gene (GbHMGS2) from Ginkgo biloba. Acta physiologiae plantarum. 2018; 40(4).
2017：
[63] Jiaping Yan, Dun Mao, Xiaomeng Liu, Lanlan Wang, Feng Xu, Guiyuan Wang, Weiwei Zhang, Yongling Liao. Isolation and functional characterization of a circadian-regulated CONSTANS homolog (GbCO) from Ginkgo biloba. Plant Cell Reports. 2017; 36.
[64] Qiangwen Chen, Jiaping Yan, Xiangxiang Meng, Feng Xu, Weiwei Zhang, Yongling Liao, Jinwang Qu. Molecular cloning, characterization, and functional analysis of acetyl-CoA C-acetyltransferase and mevalonate kinase genes involved in terpene trilactone biosynthesis from Ginkgo biloba. Molecules. 2017; 22.
[65] Xiangxiang Meng, Qiling Song, Jiabao Ye, Lanlan Wang, Feng Xu. Characterization, Function, and Transcriptional Profiling Analysis of 3-Hydroxy-3-methylglutaryl-CoA Synthase Gene (GbHMGS1) towards Stresses and Exogenous Hormone Treatments in Ginkgo biloba [J]. Molecules. 2017; 22(10).
2016:
[66] Shuiyuan Cheng, Xiaohui Wang, Feng Xu, Qiangwen Chen, Tingting Tao, Jing Lei, Weiwei Zhang, Yongling Liao, Jie Chang, Xingxiang Li. Cloning, expression profiling and functional analysis of CnHMGS, a gene encoding 3-hydroxy-3-methylglutaryl coenzyme A synthase from Chamaemelum nobile. Molecules. 2016; 21.
[67] Ye JB, Chen QW, Tao TT, Wang GY, Xu F. Promotive effects of 5-Aminolevulinic acid on growth, photosynthetic gas exchange, chlorophyll, and antioxidative enzymes under salinity stress in Prunnus persica (L.) Batseh Seedling. Emirates Journal of Food and Agriculture. 2016; 28.
[68] Liao Y, Xu F, Huang X, Zhang W, Cheng H, Wang X, Cheng S, Shen Y. Characterization and transcriptional profiling of Ginkgo biloba mevalonate diphosphate decarboxylase gene (GbMVD) promoter towards light and exogenous hormone treatments. Plant Molecular Biology Reporter. 2016; 34.
2015:
[69] Liao YL, Shen YB, Chang J, Zhang WW, Cheng SY, Xu F. Isolation, expression, and promoter analysis of GbWRKY2: a novel transcription factor gene from Ginkgo biloba. International Journal of Genomics. 2015; 2015.
2014:
[70] Young-Jin Son, Moonhyuk Kwon, Dae-Kyun Ro, Soo-Un Kim. Enantioselective microbial synthesis of the indigenous natural product (-)-α-bisabolol by a sesquiterpene synthase from chamomile (Matricaria recutita) [J]. The Biochemical Journal. 2014; 463.
授权专利
1 一种基于转录组测序挖掘黄连小檗碱生物合成相关基因的方法 发明专利，ZL202110376445.X 2023.3.17 许锋;刘晓梦;谭俊萍;叶家保;张威;廖咏玲;杨晓燕
2 一种母菊中新型α-甜没药醇合成酶(MrBAS)启动子的特性及功能分析的方法 发明专利，ZL202210974067.X 2023.10.24 许锋;叶家保;郑嘉瑞;张威威;廖咏玲;王莉娜;王启剑；陈强文
3 一种构树叶片组培再生体系的建立方法 发明专利，ZL202111342757.5 2023.1.30 许锋;陈强文;晁伟;喻丽;刘晓梦;向娟;宋逸凡;张威威;廖咏玲;叶家保;杨晓燕;王莉娜
4 一种调控银杏萜内酯合成的MYC2转录因子及其应用 发明专利，ZL202310482745.5 2024.2.20 许锋;郑嘉瑞;廖咏玲;王莉娜;叶家保;陈强文;何筱;张威威
5 一种构树同型半胱氨酸硫甲基转移酶基因BpHMT2及其应用 发明专利，ZL202310052969.2 2023.12.22 许锋;陈强文;叶家保;郭龙飞;祝嫦晔;卜宪辰;张威威;廖咏玲;王莉娜;薛岩晟
